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Kansas State University

Research Foundation
Kansas State University
2005 Research Park Circle
Suite 105
Manhattan, KS 66502-5020
Tel: 785-532-5720
Fax: 785-532-3920
tech.transfer@k-state.edu

Diagnostic Chip for Pathogen and Resistance Detection

Reference Number: 08-32

Inventors: Sanjeev Narayanan; Gregory Peterson; Tiruvoor Nagaraja; Jianfa Bai

Background:

With current technology, it can take weeks and multiple lab personnel to detect disease-causing bacteria and to determine the antimicrobial resistance profile for each isolated bacterium. The result is physicians and veterinarians beginning treatment prior to knowing exactly what they are up against. With our new technology, this entire process is reduced from a matter of weeks to just 24 hours.


Microarray Image Data - green spots represent negative reactions; red spots represent presence of pathogens

Our technology detects and characterizes hundreds of genus, species and serotypes of pathogens, and identifies a community antimicrobial resistance profile. Our spotted microarray is currently capable of detecting 588 genes in triplicate from bacteria, including virulence genes, antimicrobial genes and heavy metal resistance genes. We have identified and validated the know-how to extract DNA from complex samples such as animal feces, soil and water and streamlined the labeling and hybridization protocols. Many argue that microarrays are unreliable, but by incorporating a 25-mer to each printed spot on the microarray, we can ensure that a negative hybridization of any given spot is a true negative result and not a failure to print the intended probe. Our tools and protocols are successful in identifying genetic targets with high specificity, reliability, and reproducibility in complex sample matrices and have been validated by comparing the results to traditional “gold-standard” procedures. Finally, this simple technology is easily customizable for use in any area of bacterial analysis.

Advantages:

  • Quality control through 25-mer ensures negative hybridization of any spot is a true negative
  • Ability to perform literally thousands of molecular tests in just 24 hours on a single sample
  • Inexpensive – microarray can be performed at $0.02 per reaction
  • Easily adaptable with newly-emerging pathogens
  • Develop complete genomic array of complex environments
  • Extreme specificity – distinguish between two Salmonella strains differing by a single geneDetect genes that encode antimicrobial resistance among bacterial pathogens
  • Software application requires no medical/diagnostic training

Applications

  • “Diagnostic Lab on a Chip”
  • Screen environments and individuals in the following areas:
    • Slaughterhouses
    • Bio-safety facilities
    • Emerging and re-emerging outbreaks
    • Category A-C bioterrorism agents
  • Rapid pathogen discovery and analysis
1000’s of probes (nucleotide sequences) printed on a glass slide. These probes serve as a trap for genes in the sample tested.
Pipette tip
Printed area
Cover slip
Whole slide
Lifted legs

Patent Status

  • Provisional patent application filed in July 2008.

Kansas State University Research Foundation seeks to have discussions with companies that are interested in licensing and/or research collaborations.

Interested parties should contact:

Kansas State University Institute for Commercialization (KSU-IC)
2005 Research Park Circle Manhattan, KS 66502
Tel: 785-532-3900 Fax: 785-532-3909
E-Mail: ic@k-state.edu