2013 WGRC Publications

Journal Articles

Akhunov, E., Sehgal, S., Liang, H., Wang, S., Akhunova, A., Kaur, G., Li, W., Forrest, K.L., See, D., Simkova, H., Ma, Y., Hayden, M., Luo, M.-C., Farris, J., Dolezel, J., & Gill, B.S. (2013). Comparative analysis of orthologous genes in grass genomes reveals the accelerated rates of alternative splicing and coding sequence evolution in polyploid wheat. Plant Physiol, 161(1). 252-265. https://doi.org/10.1104/pp.112.205161

Dawson, J. C., Endelman, J.B., Helot, N., Crossa, J., Poland, J., Dreisigacker, S., Manès, Y., Sorrells, M.E., & Jeannine, J.-L. (2013). The use of unbalanced historical data for genomic selection in an international wheat breeding program. Field Crops Research, 154, 12-22. https://doi.org/10.1016/j.fcr.2013.07.020

Gill, BS. 2013. SNPing Aegilops tauschii genetic diversity and the birthplace of bread wheat. New Phytologist, 198(3), 641-642. https://doi.org/10.1111/nph.12259

Heslot, N., Rutkoski, J., Poland, J., Jannik, J.-L., & Sorrells, M.E. (2013). Impact of marker ascertainment bias on genomic selection accuracy and estimates of genetic diversity. PLoS ONE, 8(9): e74612. https://doi.org/10.1371/journal.pone.0074612

Lado, B., Matus, I., Rodriquez, A., Inostroza, L., Poland, J., Belize, F., Pozo, A.D., Quince, M., & Zitzewitz, J.V. (2013). Increased genomic prediction accuracy through spatial adjustment of field trial data. G3, 3(12), 2105-2114. https://doi.org/10.1534/g3.113.007807

Liu, S., Sehgal, S.K., Li, J., Lin, M., Trick, H.N., Yu, J., Gill, B.S., & Bai, G. (2013). Cloning and characterization of a critical regulator for pre-harvest sprouting in wheat. Genetics, 195(1), 263-273. https://doi.org/10.1534/genetics.113.152330

Liu, W., Danilova, T.V., Rouse, M.N., Bowden, R.L., Friebe, B., Gill, B.S., & Pumphrey, M.O. (2013). Development and characterization of a compensating wheat–Thinopyrum intermedium Robertsonian translocation with Sr44 resistance to stem rust (Ug99). Theor Appl Genet, 126(5),1167-1177. https://doi.org/10.1007/s00122-013-2044-6

Liu, X.M., Khajuria, C., Li, J., Trick, H.N., Huang, L., Gill, B.S., Reeck, G.R., Antony, G., White, F.F., & Chen, M.S. (2013). Wheat Mds-1 encodes a heat-shock protein and governs susceptibility towards the Hessian fly gall midge. Nature Commun, 4, 2070. https://doi.org/10.1038/ncomms3070

Luo, M.C., Gub, Y.Q., You, F.M., Deal, K.R., Ma, Y., Hua, Y., Huo, N., Wang, Y., Wanga, J., Chena, S., Jorgensen, C.M., Zhang, Y., McGuire, P.E., Pasternak, S., Stein, J.C., Ware, D., Kramer, M., McCombie, W.R., Kianian, S.F., Martis, M.M., Mayer, K.F.X., Sehgal, S.K., Li, W., Gill, B.S., Bevan, M.W., Simková, H., Dolezel, J., Weining, S., Lazo, G.R., Anderson, O.D., & Dvorak, J. (2013). A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proc Natl Acad Sci USA, 110(19), 7940-7945. https://doi.org/10.1073/pnas.1219082110

Mascher, M., Muehlbauer, G.J., Rokhsar, D.S., Chapman, J., Schmutz, J., Barry, K., Muñoz-Amatriaín, M., Close, T.J., Wise, R.P., Schulman, A.H., Himmelhoch, A., Mayer, K.F.X., Scholz, U., Poland, J.A., Stein, N.A., & Waugh, R. (2013). Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). The Plant Journal, 76(4), 718-27. https://doi.org/10.1111/tpj.12319

Mascher, M., Wu, S., St Amand, P., Stein, N., & Poland, J. (2013). Application of genotyping-by-sequencing on semiconductor sequencing platforms: A comparison of genetic and reference-based marker ordering in barley. PLoS ONE, 8(10), e76925.https://doi.org/10.1371/journal.pone.0076925

Olson, E.L., Rouse, M.N., Pumphrey, M.O., Bowden, R.L., Gill, B.S., & Poland, J.A. (2013). Simultaneous transfer, introgression, and genomic localization of genes for resistance to stem rust race TTKSK (Ug99) from Aegilops tauschii to wheat. Theor Appl Genet, 126(5), 1179-88. https://doi.org/10.1007/s00122-013-2045-5

Olson, E.L., Rouse, M.N., Pumphrey, M.O., Bowden, R.L., Gill, B.S., & Poland, J.A. (2013). Introgression of stem rust resistance genes SrTA10187 and SrTA10171 from Aegilops tauschii to wheat. Theor Appl Genet, 126(10), 2477-2484. https://doi.org/10.1007/s00122-013-2148-z

Qi, L.L., Wu, J.J., Friebe, B., Qian, C., Gu, Y.Q., Fu, D.L., & Gill, B.S. (2013). Sequence organization and evolutionary dynamics of Brachypodium-specific centromere retrotransposons. Chromosome Res, 21. 507-521. https://doi.org/10.1007/s10577-013-9378-4

Raupp, W.J. & Friebe, B. (2013). Bikram S. Gill, Cytogeneticist and Wheat Man. Plant Breeding Rev, 37, 1-34. https://doi.org/10.1002/9781118497869.ch1Digital Object Identifier (DOI)

Rutkoski, J.E., Poland, J., Jannink, J.-L., & Sorrells, M.E. (2013). Imputation of Unordered Markers and the Impact on Genomic Selection Accuracy. G3: Genes Genomes Genetics, 3(3), 427-439. https://doi.org/10.1534/g3.112.005363

Sehgal, B., Subramanyam, B., Arthur, F.H., & Gill, B.S. (2013). Variation in susceptibility of field strains of three stored grain insect species to spinosad and chlorpyrifos-methyl plus deltamethrin on hard red winter wheat. J Econ Entomol, 106(4), 1911-1919. https://doi.org/10.1603/EC13083

Sehgal, B., Subramanyam, B., Arthur, F.H., & Gill, B.S. (2013). Variation in susceptibility of laboratory and field strains of three stored-grain insect species to β-cyfluthrin and chlorpyrifos-methyl plus deltamethrin applied to concrete surfaces. Pest Manag Sci, 70(4), 576-587. https://doi.org/10.1002/ps.3580Digital Object Identifier (DOI)

Yang, Z., Shen, Z., Tetreault, H., Johnson, L., Friebe, B., Frazier, T., Huang, L.K, Burklew, C., Zhang, X.Q., & Zhao, B. (2013). Production of autopolyploid lowland switchgrass lines through in vitro chromosome doubling. Bioenergy Res, 7(1), 232-242. https://doi.org/10.1007/s12155-013-9364-x

Other Publications

Gill, B.S., Raupp, W.J., & Friebe, B. (2013). Genomic perspective on the dual threats of imperiled native agro-ecosystems and climate change to world food security. In: Combating Climate Change: An Agricultural Perspective (Chapter 9) (Kang MS and Banga SS, Eds) CRC Press, Boca Raton, FL. pp. 163-170.

Qi, L., Friebe, B., & Gill, B.S. (2013). Centromere synteny among Brachypodium, wheat, and rice. In: Plant Centromere Biology (Jiang J and Birchler JA, Eds). John Wiley & Sons, Inc, Ames, IO. pp. 57-66.

Raupp, W.J. ed. (2013). Annual Wheat Newsletter , volume 59. 183 pp.

Meeting Abstracts

Plant & Animal Genome XXI Abstracts (12-16 January, 2013, San Diego, CA) are at http://www.intlpag.org/.

Danilova, T.V., Friebe, B., & Gill, B.S. (2013). Development of single-copy gene FISH for wheat and its application in studying chromosomal rearrangements in wild relatives and mapping of the wheat genome. [Abstract P0913]

Dvorak, J., Luo, M.C., Gu, Y.Q., You, F.M., Deal, K.R., Ma, Y., Hu, Y., Huo, N., Wang, Y., Wang, J.R., Chen, S., Jorgensen, C., Zhang, Y., McGuire, P., Pasternak, S., Stein, J., Ware, D., Kramer, M., McCombie, W.R., Kianian, S., Martis, M.M., Mayer, K., Sehgal, S.K., Gill, B.S., Bevan, M., Doležel, J., Lazo, G.R., Anderson, O., Massa, A.N., Rabinowicz, P.D., & Devos, K.M. (2013). A 4-gigabase comparative physical map of Aegilops tauschii, the wheat D-genome progenitor, opens the window into the evolution of gene content and meaning of genome size in grasses. [Abstract W197]

Olson, E., Rouse, M., Pumphrey, M., Bowden, R.L., Gill, B.S., & Poland, J. (2013). Integrated genetic mapping and transfer of genes for Ug99 wheat stem rust resistance from the D genome of Aegilops tauschii to bread wheat, Triticum aestivum. [Abstract P0256]

Tiwari, V.K., Sehgal, S.K., Friebe, B., Kalia, B., Doležel, J., Simkova, H., & Gill BS. (2013). Alien chromosome-specific SNP discovery for monitoring alien chromosome introgression in wheat. [Abstract P0272]