Skip to the content

Kansas State University

  1. K-State Home >
  2. Wheat Genetics Resource Center >
  3. Bioinformatics Index Page

BIOINFORMATICS.


  1. Blast :

  2.      NCBI

         DFCI Wheat Genome

         Wheat Genome Database

         Rice Genome Annotation

         EST BLAST HITS

         Wheat SNP Database

  3. Fingerprinting :

  4.      Genemapper4.0

         GenoProfiler 2.0

         FPC (FingerPrinted Contig)

         Tutorial of Image (The Fingerprint image analysis System)

         Web FPC Tool

         FPMiner2.0

         FPPipeliner2.0

         Internet Contig Explorer(iCE)

  5. Frgament Analysis :

  6.      Genemapper4.0

  7. Sequence Analysis :

  8.      Sequence Scanner Spftware v1.0

         Sequencher

         Genetool Lite:

  9. Alignment of Sequence Pairs :

  10.      BCM Search Launcher: Pairwise sequence alignment

         Global Alignment program

  11. Multiple Sequence Alignment :

  12.      T-COFFEE

         ClustalW @ EBI

  13. Genomic DNA-mRNA Alignment :

  14.      Spidey

         SIM4 - cDNA and Genomic DNA Alignment

         MGAlignIt

  15. Gene Prediction :

  16.      Gene Scan

         FGENESH

  17. Repeat Identification :

  18.      RepeatMasker

         Censor (GIRI)

         TIGR Plant Repeat Database

  19. Primer Designing :

  20.     Primer3

  21. SNP Analysis:

  22.      Sequence Scanner SoftwareV1.0

         Sequencher4.8

         SNPmasker

         PARSESNP

  23. QTL Analysis :

  24.      Qgene4

  25. Functional Annotation :

  26.      Blast2go

         AmiGo

  27. Translate / Inverse Tool :

  28.      Translate

         TranslatER

         Reverse, Compliment, Inverse