K-State

Wheat Genetic and Genomic Resources Center

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  • Personnel
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• Genomic Resources
• Fingerprinting Facility
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Blast	Fingerprinting
Fragment Analysis	Sequence Analysis
Alignment of Sequence Pairs	Multiple Sequence Alignment
Genomic DNA-mRNA Alignment	Gene Prediction
Repeat Identification	Primer Designing
SNP Analysis	QTL Analysis
Functional Annotation	Translate Inverse Tool

 

1. Blast :





     NCBI

     DFCI Wheat Genome

     Wheat Genome Database

     Rice Genome Annotation

     EST BLAST HITS

     Wheat SNP Database

 

 

2. Fingerprinting :





     Genemapper4.0

     GenoProfiler 2.0

     FPC (FingerPrinted Contig)

     Tutorial of Image (The Fingerprint image analysis System)

     Web FPC Tool

     FPMiner2.0

     FPPipeliner2.0

     Internet Contig Explorer(iCE)

 

 

3. Frgament Analysis :




     Genemapper4.0

 

 

4. Sequence Analysis :




     Sequence Scanner Spftware v1.0

     Sequencher

     Genetool Lite:

 

 

5. Alignment of Sequence Pairs :




     BCM Search Launcher: Pairwise sequence alignment

     Global Alignment program

 

 

6. Multiple Sequence Alignment :




     T-COFFEE

     ClustalW @ EBI

 

 

7. Genomic DNA-mRNA Alignment :




     Spidey

     SIM4 - cDNA and Genomic DNA Alignment

     MGAlignIt

 

 

8. Gene Prediction :




     Gene Scan

     FGENESH

 

 

9. Repeat Ientification :




     RepeatMasker

     Censor (GIRI)

     TIGR Plant Repeat Database

 

 

10. Primer Designing :




    Primer3

 

 

11. SNP Analysis:




     Sequence Scanner SoftwareV1.0

     Sequencher4.8

     SNPmasker

     PARSESNP

 

 

12. QTL Analysis :




     Qgene4

  

 

 

13. Functional Annotation :




     Blast2go

     AmiGo

 

 

 

14. Translate / Inverse Tool :




     Translate

     TranslatER

     Reverse, Compliment, Inverse