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2003 Workshop program
2003 Workshop summary

NSF / USDA / IGROW Workshop on Wheat Genome Sequencing

10-11 November 2003.

Crystal Gateway Marriott Hotel

Washington DC

AGENDA

10 November, 2003.

Session I. The Importance of Wheat as a Crop and a Genetic System, Current Investment. Forrest Chumley, presiding.

  • Introduction to workshop and welcome. Bikram Gill, Kansas State University

  • Dr. Rodney Brown, Deputy Under Secretary, REE (Research, Education and Economics)-USDA, Washington DC;

  • Mike Seyfert, Assistant Legislative Director, Office of U.S. Senator Pat Roberts.

  • Wheat Improvement in the 21st Century (Dave Van Sanford, University of Kentucky, Lexington).

  • Wheat Genomics (Jan Dvorak, University of California–Davis).

  • Triticeae Genome Analysis (Shahryar Kianian, North Dakota State University, and Jaswinder Singh/Peggy Lemaux, University of California–Berkeley).

Session II. The Importance of Wheat as a Crop and a Genetic System, International Collaborations. Bikram Gill, presiding.

International Collaborations in Wheat Genomics (reports from Australia (Rudi Appels), Canada (Daryl Somers, Bill Crosby), China (Jizeng Jia), Czech Republic (Jaroslav Dolezel), France (Boulos Chalhoub), Germany (Nils Stein), Italy (Albino Maggio), Japan (Yasunari Ogihara), South Africa (Anna-Maria Botha-Oberholster), Switzerland (Beat Keller), and U.K. (Ian Bancroft).

Lunch speaker: Cal Qualset, University of California–Davis, How Will the Broader Research and User Communities be Engaged ?

Session III. Lessons Learned: Comparative Mammalian and Grass Genome Analysis. Katrien Devos, presiding.

  • Lessons Learned and Benefits of Genomic Analysis of Model Organisms: Targeted Sequencing in Multiple Vertebrates: New Frontiers in Comparative Genomics (Eric Green, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD).

  • Rice Genome Research Program (Takuji Sasaki, NIAS, Tsukuba, Japan).

  • Sequencing the Maize Genome–an Update (Joachim Messing, Rutgers University, NJ).

  • Sequence Assembly and Annotation of the Maize Genespace (Cathy Whitelaw, TIGR).

Session IV. Lessons Learned: Emerging Sequencing Technologies.
Nora Lapitan, presiding.

  • Critical Analysis of Genomic Sequencing Technologies for Complex Plant Genomes (Jeff Bennetzen, University of Georgia, Athens).

  • Title to be Announced (Francis Quetier, Deputy Director, Genoscope, France).

  • Sequential Shot-gun Sequencing (Alexander Gutin, Myriad Genetics, Salt Lake City, UT).

Session V. Annotations, Bioinformatics, and Databases.
Oscar Riera-Lizarazu, presiding.

  • Synteny-based Strategies to Extract Genome Information from Gene-rich Draft Sequences (Richard McCombie, Cold Springs Harbor, NY).

  • The Gramene Database (Lincoln Stein, Cold Spring Harbor Laboratory, NY).

  • The GrainGenes Database (Olin Anderson, USDA–ARS, Albany, CA).

  • Discussion


11 November, 2003.


Session VI. A Case for Wheat Genome Sequencing. Olin Anderson, presiding.

  • Summary of Resources Available for Wheat Genome Sequencing (Rudi Appels, Murdoch University, Australia).

  • Biological Features of the Wheat Genome (Kulvinder Gill, Washington State University, Pullman).

  • Do we Need to Sequence the Wheat Genome? (Beat Keller, University of Zurich, Switzerland).

  • Wheat–rice Colinearity: the Good, the Bad, and the Ugly (Justin Faris, USDA–ARS, Fargo, ND).

  • What We have Learned from Sample Sequencing of the Wheat Genome (John Fellers, USDA–ARS, Manhattan, KS).

  • A Strategic Plan for Sequencing the Gene-rich Regions of the Wheat Genome ? (Bikram Gill and Wanlong Li, Kansas State University, Manhattan).

Session VII. Structured Discussion on the Pros and Cons of Sequencing the Wheat Genome. Rudi Appels, presiding.

  • Structured Discussion on the Pros and Cons of sequencing the wheat genome.

  • Feedback from Panel (Jeff Bennetzen, Robin Buell, Takuji Sasaki, Piotr Gornicki, Jan Dvorak).

  • Concluding Remarks and Timetable for the Next Steps (Bikram Gill, Rudi Appels).

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Kansas State University
February 1, 2005