Seqencing reactions (using Amersham
ThermoSequenase Kit)
- a) Get full tub and bucket of ice, b) get isotope out if in -20°C
- Get dGTP or dITP master mix buffer and reaction buffer out and thaw on
ice
- Thaw primers on ice, they need to be 2 pmol/
l
- Label 4 PCR tubes per sample in the following order and color code:
|
Base Letter |
Marker Color |
Description |
|
A |
black |
all colors |
|
C |
red |
crimson |
|
G |
green | |
|
T |
blue |
teal |
- Label 4 colored tubes for termination mixes and
_X_ colored tubes for
sample reaction mixes
- Get dNTPs out to thaw
- Do termination mix calc. using kit quick card as preparing for (n + 1)
samples
- Do reaction mix calc. (normally 1
l
of mini prep is used, so adjust H2O)
- Transfer 2.5
l termination mix to each
appropriate tube (left to right)
- Transfer 4.5
l reaction mix to each
appropriate tube (front to back) and mix sol'n with pipet tip
Tub diagram:
|
|
T |
T |
T |
T |
T |
|
Hot |
G |
G |
G |
G |
G |
|
bases |
C | C |
C |
C |
C |
|
|
A | A |
A |
A |
A |
|
Samples: |
1 | 2 |
3 |
4 |
5 |
- If using "Bonnie" don't need to overlay with oil
- Thaw stop sol'n at end of cycles and add 4
l to each tube using
single tip
- Spin pulse all samples
- Store at -20°C in refrig freezer
Notes:
- Make sure all "hot" tips and bullets get put into the radioactive
solid waste
- In our experience, the reaction will not work if the buffers are
switched
- It is very easy to get confused, allow yourself plenty of time to set
up and mix the reactions; they can be done the day before and froze
|